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  • 1
    Online Resource
    Online Resource
    New York, NY : Springer US
    Subject(s): Pharmacology. ; Chemistry Data processing. ; Bioinformatics. ; Pharmacology. ; Computational Chemistry. ; Bioinformatics.
    In: Springer Nature eBook
    Description / Table of Contents: This second edition provides new and updated methods and techniques for identification of drug target, binding sites prediction, high- throughput virtual screening, lead discovery and optimization, conformational sampling, prediction of pharmacokinetic properties using computer-based methodologies. Chapters also focus on the application of the latest artificial intelligence technologies for computer aided drug discovery. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary methods, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Computational Drug Discovery and Design, Second Edition aims to effectively utilize computational methodologies in discovery and design of novel drugs.
    Type of Medium: Online Resource
    Pages: XI, 356 p. 1 illus. , online resource.
    Edition: 2nd ed. 2024.
    ISBN: 9781071634417
    Series Statement: Methods in Molecular Biology, 2714
    Language: English
    Note: Computer-Aided Drug Discovery and Design – Recent Advances and Future Prospects -- Virtual Screening Process - A Guide in Modern Drug Designing -- Molecular dynamics as a tool for virtual ligand screening -- Antiviral Drug Target Identification and Ligand Discovery -- GRAMM webserver for protein docking -- Protein–ligand blind docking using CB-Dock2 -- Applications of Molecular Dynamics Simulations in Drug Discovery -- Molecular dynamics simulation-based prediction of glycosaminoglycan interactions with drug molecules -- Mining chemogenomic spaces for prediction of drug-target interactions -- Expanding the landscape of amyloid sequences with CARs-DB: a database of polar amyloidogenic peptides from disordered proteins -- Accelerating molecular dynamics simulations for drug discovery -- Exploring the Role of Chemoinformatics in Accelerating Drug Discovery: A Computational Approach. -Recent Deep-Learning Applications to Structure-Based Drug Design -- Techniques for Developing Reliable Machine Learning Classifiers Applied to Understanding and Predicting Protein:Protein Interaction Hot Spots -- AI driven enhancements in drug screening and optimisation -- Applications of big data and AI-driven technologies in CADD (computer-aided drug design) -- Artificial Intelligence in ADME Property Prediction -- Accelerating the discovery and design of antimicrobial peptides with artificial intelligence.
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  • 2
    Online Resource
    Online Resource
    New York, NY : Springer New York | New York, NY : Springer New York
    Subject(s): Medicine. ; Pharmacology ; Biomedicine ; Pharmacology/Toxicology
    In: Springer eBooks
    Type of Medium: Online Resource
    Pages: XII, 488 p. 162 illus., 108 illus. in color. , online resource.
    ISBN: 9781493977567
    Series Statement: Methods in Molecular Biology, 1762
    Language: English
    Note: Computer-Aided Drug Design ��� An Overview -- Prediction of Human Drug Targets and their Interactions Using Machine Learning Methods: Current and Future Perspectives -- Practices in Molecular Docking and Structure-based Virtual Screening -- Phylogenetic and Conservation Based Approaches to Predict Protein Functional Sites -- De novo design of Ligands using Computational Methods -- Molecular Dynamics Simulation and the Prediction of Druggable Binding Sites -- Virtual Ligand Screening using PL-PatchSurfer2, a Molecular Surface-based Protein-ligand Docking Method -- Fragment Based Ligand Designing -- Molecular Dynamics as a Tool for Virtual Ligand Screening -- Building Molecular Interaction Networks from Microarray Data for Drug Target Screening -- Absolute Alchemical Free Energy Calculations for Ligand Binding -- Evaluation of Protein-ligand Docking by Cyscore -- Molecular Dynamics Simulations of Protein-drug Complexes:� A Computational Protocol for Investigating the Interactions of Small-Molecule Therapeutics with Biological Targets and Biosensors -- Prediction and Optimization of Pharmacokinetic and Toxicity Properties of the Ligand -- Protein-protein Docking in Drug Design and Discovery -- Automated Inference of Chemical Discriminants of Biological Activity -- Computational Exploration of Conformational Transitions in Protein Drug Targets -- Applications of the NRGsuite and the Molecular Docking Software FlexAID in Computational Drug Discovery and Design -- Calculation of Thermodynamic Properties of Bound Water Molecules -- Enhanced Molecular Dynamics Methods Applied to Drug Design Projects -- AGGRESCAN3D: Towards the Prediction of the Aggregation Propensities of Protein Structures -- Computational Analysis of Solvent Inclusion in Docking Studies of Protein-glycosaminoglycan Systems -- Understanding G Protein-Coupled Receptor Allostery via Molecular Dynamics Simulations: Implications for Drug Discovery -- Identification of Potential Microrna Biomarkers by Meta-analysis.
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