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  • DKFZ Publication Database  (3)
  • CELL  (3)
  • PROTEIN  (2)
  • human
  • GENES
  • ELSEVIER ACADEMIC PRESS INC  (2)
  • Elsevier Academic Press  (1)
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  • DKFZ Publication Database  (3)
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  • 1
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    ELSEVIER ACADEMIC PRESS INC
    Keywords: BIOLOGY ; BINDING ; MOBILITY ; SPECTROSCOPY ; DOMAINS ; sensitivity ; MOTION ; LIVING CELLS ; FLUORESCENCE ; PROTEIN-PROTEIN INTERACTIONS ; Jun ; DNA ; PROTEINS ; PROTEIN ; PATHWAY ; CELLS ; CELL ; Germany ; interactions ; CELL BIOLOGY ; FCS ; interaction ; CROSS-CORRELATION SPECTROSCOPY ; CORRELATION SPECTROSCOPY ; fluorescence correlation spectroscopy ; DIFFUSION ; molecular ; review ; RE ; correlation ; USA ; technique ; FOS ; methods
    Abstract: Fluorescence correlation spectroscopy (FCS) is an emerging technique where the interaction between biomolecules is detected through their correlated motion. It offers the advantage of high (single-molecule) sensitivity; independence of molecular orientation or distance; and simultaneous measurement of molecular interactions, concentrations, and mobilities. Here we introduce the principle of the technique and review some recent examples from the literature where FCS has been used with autofluorescent proteins for measuring protein-protein interactions and mobilities in living cells
    Type of Publication: Book chapter
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  • 2
    Keywords: PROTEINS ; EXPRESSION ; CELL ; Germany ; BIOLOGY ; keratin ; INTERMEDIATE-FILAMENTS ; cytoskeleton ; RE ; review ; GENE DOMAIN ; FOLLICLE ; HUMAN TYPE-I ; intermediate filament ; HAIR FOLLICLE ; keratins ; ALPHA-KERATIN ; COMPANION LAYER ; EPITHELIAL KERATIN ; hair ; hair keratins ; INNERMOST CELL LAYER ; OUTER ROOT SHEATH ; RESOLUTION 2-DIMENSIONAL ELECTROPHORESIS
    Abstract: Intermediate filaments are a large family of proteins that are the cytoskeletal elements involved in a number of skin, liver, neuromuscular, cardiac, eye and hair diseases. Intermediate filament genes are regulated in a tissue-and cell type-specific manner and their polymerized protein products protects the cells and tissue they are part of against a variety of mechanical and nonmechanical stresses. This book provides a comprehensive resource of methodology essentials, describing a variety of essential tools and assays for studying intermediate filaments. The book provides user-friendly advice and protocols covering all aspects of intermediate filaments including protein isolation and structure, protein and gene regulation, relationship to disease and apoptosis, and associated proteins. Both mammalian and non-mammalian systems and animal models are covered, making this book a must-have for any investigator wishing to study IF genes or their protein products. This book covers intermediate filaments from crystallography, protein chemistry, cell and molecular biology, microrheology, gene regulation, to animal models and human disease. It is practical and user-friendly with detailed 'how-to-protocols and tricks of the trade'. It includes detailed tables of useful reagents, vendors and web links. Synopsis Intermediate filaments are a large family of proteins that are the cytoskeletal elements involved in a number of skin, liver, neuromuscular, cardiac, eye and hair diseases. Intermediate filament genes are regulated in a tissue- and cell type-specific manner and their polymerized protein products protects the cells and tissue they are part of against a variety of mechanical and nonmechanical stresses. This book provides a comprehensive resource of methodology essentials, describing a variety of essential tools and assays for studying intermediate filaments. The book provides user-friendly advice and protocols covering all aspects of intermediate filaments including protein isolation and structure, protein and gene regulation, relationship to disease and apoptosis, and associated proteins. Both mammalian and non-mammalian systems and animal models are covered, making this book a must-have for any investigator wishing to study IF genes or their protein products. This book covers intermediate filaments from crystallography, protein chemistry, cell and molecular biology, microrheology, gene regulation, to animal models and human disease. It is practical and user-friendly with detailed 'how-to-protocols' and 'tricks of the trade'. It includes detailed tables of useful reagents, vendors and web links.
    Type of Publication: Book chapter
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  • 3
    Keywords: BEHAVIOR ; PHENOTYPE ; BIOLOGY ; IDENTIFICATION ; NUCLEI ; RECOGNITION ; culture ; PHENOTYPES ; PATTERNS ; IMAGES ; CLASSIFICATION ; CELLS ; CELL ; Germany ; evaluation ; human ; ACCURACY ; PROTEIN ; PROTEINS ; GENE ; TOOL ; GENOME-WIDE ; MICROSCOPE IMAGES ; SUBCELLULAR STRUCTURES ; TEXTURE ; Cell nuclei ; CELL BIOLOGY ; RE ; review ; HIGH-THROUGHPUT ; SCREEN ; analysis ; methods ; CELL-NUCLEI ; USA ; HUMAN-CELLS ; TOOLS
    Abstract: High-throughput screens of the gene function provide rapidly increasing amounts of data. In particular, the analysis of image data acquired in genome-wide cell phenotype screens constitutes a substantial bottleneck in the evaluation process and motivates the development of automated image analysis tools for large-scale experiments. In this chapter, we present a computational scheme to process multicell time-lapse images as they are produced in high-throughput screens. We describe an approach to automatically segment and classify cell nuclei into different mitotic phenotypes. This enables automated identification of cell cultures that show an abnormal mitotic behavior. Our scheme proves high classification accuracy, suggesting a promising future for automating the evaluation of high-throughput experiments
    Type of Publication: Book chapter
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